Scaffold Ga0129333_10395432

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10395432
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1224
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F014840	Metagenome	259	Y
F033405	Metagenome	177	Y
F046899	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_103954321	F006587	N/A	GFAVVGFIIGCCLTWAVMQSMHVQKKYSMNLKCIQGELYEEIRPNFYVKSHLECFEQRTLAP*
Ga0129333_103954322	F014840	AGGA	MIPFSYAVVDDEGEVIRKHRWSVKEAKWFTENNPHVKVIKLDKPVIVKEDLFKLVGECLF
Ga0129333_103954323	F033405	N/A	MNSKVKTDEQIIEAVNQYKEKYPNATRNQIVLHATGSAERVRKLAKEGRIELPPPLPKGSNSNWNRYFSLASENNAKRTGMKYNV*
Ga0129333_103954325	F046899	AGGAG	MSNTSNFDPTARQAIKEFETWQMKVFAKNAKKGWRFFNPDAFDKPTPRSAKEAWGAPYKTDLADKHEKRNERIMFAVVVLIMVVLSIL*