Scaffold Ga0129333_10167074

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10167074
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2014
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F006842	Metagenome	363	Y
F058947	Metagenome	134	Y
F065721	Metagenome / Metatranscriptome	127	Y
F094887	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_101670741	F006842	GGAG	MSYTPAICGDHLVPISECDCVNYLQELKTSAERLVQ
Ga0129333_101670742	F006618	GGAG	MSKMKQHLESEIVIKGSSHEDTAWKRYIHFEYEGNSYELRLFYDEFTGYDTYWRVPDKRPAWVAEWDSEAHEGMSFEHYLDDLTWEMNK*
Ga0129333_101670743	F094887	AGGAG	MSKELKEINEALTNLWWSAEISDNAKLWWNDHYQRLMERELAK*
Ga0129333_101670745	F065721	AGGAGG	MTKYIANENGDWWEVVEGDGLYLIDTDNPDIAEAMKEEDASPDNDKFEKFIWQYGTTVYINMEGVRV*
Ga0129333_101670747	F058947	AGGAGG	MTIPCELQELEEVMAKAGVLLTGNAYDTAQDYLQDNCACATYRYLLEGASK*