Scaffold Ga0129333_10134836

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10134836
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2269
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000808	Metagenome / Metatranscriptome	882	Y
F005348	Metagenome / Metatranscriptome	403	Y
F093770	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_101348362	F000447	AGTAGG	MGYIEIFRLDEQGAGWVDLSDATPQELLDLEIGLFQEGAL*
Ga0129333_101348364	F005348	AGG	MINSVMTFDCDECSGSGLIFWGNGLDYDVESCECDNFVLGDLF*
Ga0129333_101348365	F093770	AGGAG	MITLKHSVNLITEIDENKMPANLLGAFVNLNEVQMETLLRSAFIDALTLEGFLDKINENNQWATLKIGEN*
Ga0129333_101348369	F000808	AGGAG	MEYNYSLTTSYDGELVHTLRVSDMLEAVDAWNKCVDYGTAKEYATYNLSDPIGKMYTKTFYTNGEVVIK*