Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10126892 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10126892 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2348
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2348

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011761	Metagenome / Metatranscriptome	287	Y
F032663	Metagenome / Metatranscriptome	179	Y
F057213	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_101268921	F032663	AGGA	MSVPYQRISNATVQDIIFYDPAAERRAAQMQVNWDDYFKVGSQEILYQMEFGWWPKYCDTVLGATYYTNLPNGALISSFNPSLLIKNDQTLIRLDTFMAVKIFYES
Ga0129333_101268922	F011761	AGGAG	MAYVLGGGNNEADGFTTAIANFALRAMHESTGLVDYTTVVAPNQGNQYLVPQFAPITYQDYNPNTGAANAGFGNAPAAFEQNPSLGQGSITATPAVAATAFDIFYAWTTSFELAATLGAELGESYGEKVDIRVCEAFLSFKATPTNSLYSPTPADGFARPTELGAMELLYAGLPSNTAGWTTGFTSNSVLELIRNVKQNYKVARLPGTPIIVLDSNGDTQGGNVAGQDGSTMNRLLAELTGGAVNNPTYGGGSQVSNLGNELLATGRLDNVYGCKVAFTTFLPSATRPVLGQGSNSNVLVGAYFHETALITVLKEGLQIKMGEKPGGLQMWLTGVAYMGAGVADPRRGGAINIYQS*
Ga0129333_101268923	F057213	GAG	MTENEFAGNDTAPDAEQVTNDADTNVKAGAIRKSTTSSILNALSQASGQQFESVEAALAYVARTSSQRGGNAQPVEVDESDSRMGREDRATDNTDLRDQFMKLQRDLASKERALRTKELDSEILRNMGEKFDPDLQEYALQKIKSNIKMNRDGSFSIVNQKGQERYGMDGNPLTLNGLVNEIAQGNPKLLKGSSSQTGSGLRMGQTQFAGAQPDAIPDYAKDPAAFNAWAARNGLGKGIGLKNAKVGVSVSAMSKKVL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10126892

Overview

Ecosystem & Geography

Associated Families

Sequences