NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129333_10125219

Scaffold Ga0129333_10125219


Overview

Basic Information
Taxon OID3300010354 Open in IMG/M
Scaffold IDGa0129333_10125219 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2366
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)39.2637Long. (o)-76.0017Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F074793Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0129333_101252192F001165N/AMTTPNTPRIPDSIDIQRLQAMQLVAKMKESAEKHGIGFIGGFISPDGEKFVMTNMDDDDAMTLMPEDLK*
Ga0129333_101252193F001120GGAMTKKSIISFDRTIHGVNITEHGVKSLTKAIKLGPFQLTLNANPNGVKGSISVPGTGLSIPNIKII*
Ga0129333_101252194F001807GGAGMTVLAIEDLHYTQTHVTVTAVVDEMRLLYRATRFDPEEWAPALCRATIELDPEESIPLDEDGFCSYLDDLDPQWELIECD*
Ga0129333_101252195F074793N/AMHFQLPSHLQQELLAYDPQLKALVREQQPKKTTKKAKYPLGNIPHLIPETVVRASLQQDAIDRINGELAPGRFHTFTKVVDVATPQARTVPFAIIYHFEQCWYAAWLPQRGEDYLYGYAYAFKNTAAAAKVVPKHIWNSKDQCTEHQVGRGVQIFTYSATVTKQDIIAGADGRKWRAMGTSYYQKAREITQAISAFEQELMANIPSWNDSRSIFDRLKCTNVLDALEVPVYFTKHVEDKNSFKLTVDSLIDLL
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