Scaffold Ga0129333_10090000

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10090000
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2839
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F073565	Metagenome / Metatranscriptome	120	Y
F076961	Metagenome / Metatranscriptome	117	Y
F105019	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100900002	F076961	N/A	VRDYIDYKVRADIIKEITDLELPEDWKTKQVIDYIVRKINKDNVR*
Ga0129333_100900004	F105019	AGAAG	MGKHHDKIAASLEIRKRNHKGPGGKVPGSMNRKKTGYNRVKANGAK*
Ga0129333_100900007	F073565	AGGAG	MSDGINLTGFNQTKPATASGWNGQQYAADPKAAFPATDKSSQDGSGLGNGGK*
Ga0129333_100900008	F001280	GGCGG	MCVECGCEAFGSSTGMTSIPGGIANVSRDGESGLTLNMTATPEQRERFINER*
Ga0129333_100900009	F001176	GAG	MSDNGTGMQSPPNNESSGALTSQEVGRKKPSQGKFRSGVQSQNSMMRIDTNKHGIRRETSVGQKKTRPKKV*