Scaffold Ga0129333_10037605

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10037605
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4567
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F007921	Metagenome / Metatranscriptome	342	Y
F039131	Metagenome / Metatranscriptome	164	Y
F084237	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1003760512	F084237	GAG	MTEMTSVGDDRDRSMRLKLAIEEMLKDIDMSGEAWNDYDKDGRPYWEKYEERLKYMEENGI*
Ga0129333_1003760513	F007921	GGAGG	MINWLVNRIFRWDPLRKAIFDEVRLYQSIDRAMWEYERENSTNLTWSEGNRWYGWTYNPELKRYYFDDIGNESLMGLWEDQWLREADGQKSL*
Ga0129333_100376052	F039131	N/A	MKDNDLYKLEEYFEKKYKKEIIDQIKKFEFPNEWTPSQVIDYITYKIDRK*
Ga0129333_100376056	F001176	GAG	VSDNGTGMATPPNTQPSGAVTSQESARKNPSQGKFRSGVNGPRPATKIDRNKHGIRRETTIGQKKTRPKKV*