Scaffold Ga0129333_10031841

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10031841
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4980
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F004314	Metagenome / Metatranscriptome	444	Y
F027765	Metagenome / Metatranscriptome	193	Y
F032538	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100318411	F032538	N/A	PYGDISQEWCLQVLSWKGVDQISKKFLNRVEKTLAIRERLALGYAETGDNSDLPQLGNPFYGAC*
Ga0129333_1003184112	F004314	GAG	MYDDYDLDYTYAADYSYDLDEYYASDAQDLDEDYARDGQDYESLAYRHYA*
Ga0129333_1003184116	F001968	GAG	MFDELWSEIQDAPGEIFDLDIPELKDEKFDVNEYLNADYDY*
Ga0129333_100318414	F027765	N/A	MNDEDISQFILAFSDFMKHSEEQINSHQQWEEAKNYTEQFYEQKAAELEITVDYYLMEFV