Basic Information | |
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Taxon OID | 3300010354 Open in IMG/M |
Scaffold ID | Ga0129333_10028546 Open in IMG/M |
Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5279 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 39.2637 | Long. (o) | -76.0017 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004666 | Metagenome / Metatranscriptome | 428 | Y |
F018162 | Metagenome / Metatranscriptome | 236 | Y |
F018349 | Metagenome / Metatranscriptome | 235 | Y |
F047643 | Metagenome / Metatranscriptome | 149 | Y |
F061860 | Metagenome / Metatranscriptome | 131 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0129333_1002854610 | F061860 | GGAGG | MYSTQLPPRLQRLVDQGESGTDILHGELKNMMYEIEQELNPLLENSEELGSDEEYEDTVQRLTLTGIMEGLTSVYALTYQLAFAIQERTKKNG* |
Ga0129333_1002854613 | F004666 | N/A | MIEKGSIMTTKREYLAQKGITVGRRGRFSAAAKQALSEAEKNGIKFSAEAKQAKN* |
Ga0129333_100285462 | F047643 | GGA | MYYQLQAPNAAALKAAYWDAEVKGLDPYYLESNVFEIGTGQIEKVSSLISKYKLDILVESEHQPTGYIRR* |
Ga0129333_100285463 | F018349 | AGGAG | MDYKEGFQDGVQYTREVIIANIRKWAEKHENGDTLDWVADRIEFGTLDDNA* |
Ga0129333_100285465 | F018162 | GGA | MLANLAEAVAKAQPRWSDPAYATRIAISHMIGDGWSMETGWGLHVNEIGDNEHKIAIIDFEQMTFSLHEEDSHFNKDNKVKGMKNTPIFTQDLRTFVEKYTDVPLLV* |
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