Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10028138 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10028138 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5320
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (88.24%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5320

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (88.24%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F006743	Metagenome / Metatranscriptome	365	Y
F010680	Metagenome / Metatranscriptome	300	Y
F016263	Metagenome / Metatranscriptome	248	Y
F052570	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100281381	F010680	N/A	VRVCALIAVERWLVKFGSEDRPNYAAGKRFGKLEPEINANIRANVAEWAVARHYNLGWNMPWYPNDLHKARKNISDVGDLEVRTIRTQSAIPFWKKDAGRTIVGAKVLDDEYYSLVEIYGKFQADDYMNDEYADISIEGWRVPVELLEV*
Ga0129333_1002813810	F052570	AGGAGG	MSKMKYKLPKGVTLEILDDDAHRKDRQDSAFYTWWDTQAVASLTYEDREYSIYCVGEMRVHYKDQVIRYCDDLVNAGITNDKDLAKIDEEGGEWINNSWFEVYDETSNEYTGEVYHTVQDAIETVANWVVDKEEVNA*
Ga0129333_100281383	F006743	GGAGG	VKIKGPQKNMLGLRLVGEEESGNAFSLYGPKRAGLITTPRTHDQALSELLNSLEREVEDLNSKYCEAYVTLINVMEHLVRLTDLLLPTNTTKMKDC*
Ga0129333_100281385	F005146	AGGAGG	MKLTNFYEVMDRKGDIAWGGASVTDAVEWFRRGLDNSIFVSVWNEEDIEEPVLVTDKIEVTNLVLATILDEREREGTIA*
Ga0129333_100281387	F002827	AGGA	MNKEYYQAKADLCRDLAIKQMVEGDSKRAGENLIRMVNALNELNLINYKEEKDNER*
Ga0129333_100281389	F016263	AGGAGG	MPKCGVCGWTFSDRTLTKHAETPCGEESEKADRYLPEIDDLLRQEEESK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10028138

Overview

Ecosystem & Geography

Associated Families

Sequences