Scaffold Ga0129333_10025275

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10025275
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5627
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073458	Metagenome / Metatranscriptome	120	Y
F085684	Metagenome / Metatranscriptome	111	Y
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1002527513	F085684	GGA	MTVYAYSEVESAYKILTELVKRENKLHPMDMTIMDQHLDEIQYEILPMLEEIVYFDPTP*
Ga0129333_1002527519	F073458	N/A	MSAKLIELATEIIDTNPAGSQLIVNLVKAETGAEILDALENYDSTVLENHTQPVDSEDDGYVSLTDADGTVTYV*
Ga0129333_1002527520	F093764	N/A	MARRCNSASRQMVENLQSQLVDYFQENILEDCDYEDLTGSDLLEALVGTFRELESEIQKKLNPLQFVLNKLDPKDSGSQVLNG*