Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10020479 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10020479 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6284
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (33.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6284

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (33.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F002867	Metagenome / Metatranscriptome	524	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1002047912	F002867	N/A	MNVVHTTDYGNGFSLDQLENERGELYYRACKDSICRYAEDHYIAVMYLENMGWDPKQQAHQ*
Ga0129333_1002047913	F002317	N/A	MEHHEDIHAAAPDPHNPFNQIVPALLTAAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLADLEGRVRIIEMTVGRHNK*
Ga0129333_100204793	F004722	N/A	MSRPKTGRELVLDWLNREIRAARTADLQRAAAFLEWARAIRKGCSKQRGGARVAQSNAWRKNVDDDVRWHV*
Ga0129333_100204795	F006109	N/A	MTRYVVMVEDRWVTAVYGPGKGIGFTASKEDASSWVTYERAVAAARTVAECTNSPVAVHSIDEPAYPRSWK*
Ga0129333_100204796	F017122	N/A	MEVVPFQEQLDPELRLGEGRSRTSSEKALLFELKIWLPGQGAMRDLVRAESLQQAIEFAQNRYPNCKVEVPNTAAKKPKLARAKNGPRETARRRIKLVEKKNESADC*
Ga0129333_100204797	F043896	GGAG	MSQQIADWARQSWGEVIVDQNRVDLLDKLYFWDGRDKKDHPMHSTYTGLYLKYTAN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10020479

Overview

Ecosystem & Geography

Associated Families

Sequences