Scaffold Ga0129333_10016068

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10016068
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7114
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F004314	Metagenome / Metatranscriptome	444	Y
F005727	Metagenome / Metatranscriptome	392	Y
F021760	Metagenome / Metatranscriptome	217	Y
F064683	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100160681	F004314	N/A	MYDDYDLDYTYSNDYGQDLEEYTQDLDEDYARDTHDLEALAYRHYA*
Ga0129333_1001606810	F001968	GAGG	MFDELWSEIQDAPGEIFDMDIPELRDDEKFNVNEYLNANYDY*
Ga0129333_1001606814	F005727	N/A	MQFLTRSRSPEFHRATMLRLLVTALLLWGFWEPLRPIRSVTAQALDTAADLIAH*
Ga0129333_1001606817	F064683	N/A	MTADLAAALLNRAANGTQLLQVLDSITDSVEQENAAPSAPTAEPIQF*
Ga0129333_100160686	F021760	GAG	MCGPVFEYTFEDFLNDASPEEWAEWESKAAELELPLDYYIQEFV*