Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10011862 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10011862 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8266
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (23.53%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8266

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (23.53%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008081	Metagenome / Metatranscriptome	339	Y
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F047062	Metagenome	150	Y
F049637	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1001186210	F001775	N/A	MMHDQRKLIAIIAFIAGVILAFIVFPRPEQETVYKFETKVETDTIYTHVVDTIYIPKTKIKTKVLRDTILLDYKPKISLFKTSIPSEYGSTHVSGEVLGEVLKMTATNDFKIPVVTNTITNTETKTIIQKPKGIYLGAGVNSLLQPSGKVSYLDNKYLFEYGYQPVTKVHSLGISKKLF*
Ga0129333_1001186211	F036704	N/A	MWIEIEVMLSGNTIDWKSLGLEVQHEWSRRMVRAGDIQYVQELMHDIQIMAFYDNTTCLVKGNYKDIRSEILHLDQESDLD*
Ga0129333_1001186213	F008081	N/A	MEESEIINPFGYGKASKVMDENRKPAEWWIDYIQFNDVVSENEFYVLFADGFLIKKGRSKFRSSQYLKGDRFKSFKECHESEI*
Ga0129333_1001186215	F047062	N/A	MNYQTENFFDQEITFTYEGQDYLWIGDYTIEHTGEDESEFAPAYGEMEISIDHTTSLSSYEHGFEVIPTRSILMALEIEIERNY*
Ga0129333_100118623	F029443	N/A	MTLVDLVKKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIQYPVLWTVVRPSVYSSTTMRYDLVLLFADLLTEDKSNRLQIQSDQMLVALDFLAKLKLDNDYSFNTAPNGAIEFFQERFDDFTAGVSIAIQVIAPMPLNLCAIPTEQAS*
Ga0129333_100118624	F049637	N/A	MTIFEKDALGVPSTLIAIFANVSQVIGLGFVNMFFTWIISILSIIYLIYKIKNEKTKFEANKDEEGK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10011862

Overview

Ecosystem & Geography

Associated Families

Sequences