Scaffold Ga0129333_10011696

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10011696
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8316
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F014614	Metagenome / Metatranscriptome	261	Y
F021513	Metagenome / Metatranscriptome	218	Y
F067695	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100116961	F067695	N/A	YTVGDIPFELMAIVRVAWYRRGMAYEVEEYQIEESDDADKQFRYVVETALRQGADVCVLTQYQPEALGVQQ*
Ga0129333_1001169610	F014614	N/A	MTDWYADYYRQSRGYNDNDLRELRSAPRKPPTKVPDVFKHRFADPAEYDAWVEERRRDYFG*
Ga0129333_1001169612	F021513	N/A	MSMYVLSESQFDQITKALEAARFALETSQHVQLDLTKPKQTIPLPAGEKLVRTSDVQKVKSQSKTRKSSRKGQRGVAVLTEPKVLEIKRQLAAGGKTVGAIAREFGVHITTINCIKWGKTWKHVQIQQPVPVVVAD*
Ga0129333_1001169619	F004722	N/A	MSPARTGRELVMEWLMREIRGAKTADLQRAAAFLEWARDVRKGCSKQRGGARVAQSNAWRKRVDDDVRW*
Ga0129333_1001169621	F006109	AGTAG	MTRYVVMVEDRWVTAVYGPGKGISFTQSKEDASSWVTYERAVAAARAVAECTNRPVAVHSVDDPAYPRSWK*