Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10008220 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10008220 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9843
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (28.57%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9843

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (28.57%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F019817	Metagenome	227	Y
F020342	Metagenome / Metatranscriptome	224	Y
F058079	Metagenome / Metatranscriptome	135	N
F074820	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100082201	F074820	GAGG	MTVLAIEHTSFTDTHVTVTAVVDEMRLLYHATHLDPEEWA
Ga0129333_1000822019	F058079	AGAAGG	MAKDHRLELDRYFDYGKDLFAKKRNLNFDDLFSVKANSGAPPWNLNRFDSTDLLRRIQTKKLIQNPGLQQVGEGPTEVFAGIGRFDRNKDYDFMNGRAKTNQRPEEQPGFNTTWGEFYSLSPTMNPGKRISNPMPRAKNPDPKGYIMAQMEQKTENEAEDKKSVAQLLAGDKEDGKD*
Ga0129333_100082202	F020342	N/A	MAAFIDTINLFDRINLADCARRRASANVLDTTRFESEYHTAQLWMKYRCVNTPSYSYIEE
Ga0129333_100082203	F001120	GGAGG	VTKRSLISFDRTIHGVNITEHGVKSYTKAIKLGPFQVTLNANPNGVKGSFSIPGTGVSIPNIKLI*
Ga0129333_100082204	F001165	N/A	MKDNTPRIPDSLDMQRLQAMQLVARMKETSDRLGMGFIGGFIAPNGEKFVMSNMDDDDYKALMPEDLK*
Ga0129333_100082206	F019817	N/A	MSTATLPALSINQRNLYTYFLNHKKKHGNAPCFVPRCPTTMSRIDQYLQALVKLEMYGLIHVDRRSENYTGWIMTEPKCIR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10008220

Overview

Ecosystem & Geography

Associated Families

Sequences