Scaffold Ga0129333_10007589

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10007589
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10231
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F009141	Metagenome / Metatranscriptome	322	Y
F014614	Metagenome / Metatranscriptome	261	Y
F022190	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000758910	F022190	AGGAGG	VKVLDIEELRFEGDHLVVDALVDDAVLVYPQTQLDPPEWGPALCRGTLYFSDEDLIPATDAQLRAMLTERVDDWAPLDTSDWNV*
Ga0129333_1000758912	F001841	GAGG	MIPTMFERPNLLLGLMRVAAWLFWRDPVAKPEPPQPKRPRKPILGYTIGDIPYELLAVIRVSWYRKGMAYEVEEYQIEESDDAVPQFHYIVGTALNQGADVCVLTQYEPAALGVPE*
Ga0129333_100075898	F009141	N/A	MTENSMVPFYRSYLLNGRTIYLDKLSELSDSELHLLNVDTMAALQEARHEYENIENKQSEEAGPAYRRLKVAGYFQAAIKLELENG*
Ga0129333_100075899	F014614	AGGA	MNYNAHEDYYRQSRGYNWHDMYELRQQSRPTSTEVPEVFKHMFADRAAYDAWVDERRKLYFG*