Scaffold Ga0129333_10007065

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10007065
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10625
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F026558	Metagenome	197	Y
F040626	Metagenome	161	Y
F057213	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000706510	F057213	GAG	MTENNIVGSDTAAPDVTQENNVTDGKVNPGAIRKSTTTSLLNALSQASGQQFESVEAALAYVARTSNSVGNVKPVEADTPEPRMGREDVSDNTDLREQFSKLQRDLQSKERALRQKELDSEILRTMGDKFDPDLVDYALQKVKSNIQFKRDGTYAIVNQKGQERYGLDGNPLTIAGLVNEVASGNPKLLKAGNGLSGSGLKPGQNNFAGAPLDQIPDYSKDPAAFNAWASKQGLGRSVGLRGTKVSATVSGQSRKLF*
Ga0129333_1000706511	F026558	AGG	MHTQELISKNPIYNSLYEQMLAYQYAYLGGYVFKTYVRKKRPSEDSNLWQDLVNNTVAQPISRYIVDTINDVLFEPGVKRDMKFCTPTGVYINPDNTEWSDLFLLDCDLQNRSLNSFMEGVGQLSSIFGHCWVFVDMPQQMEGNLGRPYVVSMSPLNVWDWEWEWFGGKPLVKYVKVLESEDKHNWYLKTYHLGTDTTPSYWVSYRVGKSVSQDDTEETGRGEYPPGMALPAFIVYGRRDPRSMDFGVSDIDSASDAQREHYKLECEAYTAIQFAHTLIRADKGVSIPVHAGAIVRASQGQIETIPVNTGDVDAVLKKQNDILEHIEALTGLGGLRNSKNQLASGIAIIEERKQLHRLAKSKARLMENAEEMIFTFAARFMNMRWAGEVIYNTDYEAYDTNYRMALIKEARQLVQNNPIIDSLIAKEIIGMLAPDESVPEYEQAYIDTITDTTVKDLMTKENEQVLSRDLGSMIPTAKDFGMNEPTYGDDTGYDTAMGDDSTGAGTPITFTGQSYYTQQAVATQLQGINTGR*
Ga0129333_100070653	F040626	N/A	MVSILQIDSLGKRYGLLPSEVISRGNTFDLYIMDCALTFEHHQHKKAMNNGKDPVPEYTQEQLLNIFNKGQGIV*
Ga0129333_100070655	F003807	GGA	MTNQILTTTEEKLRSLIADEAKLMPMLNNMEQTIRQMRAKQAFRLALLNQLLEDYYDKYSGN*
Ga0129333_100070658	F002260	AGGA	MSVPYQRISNANVSDIIFYDPAAERRASQMNVNWDDYFKVGSQEILYKLEFGWWPKYCDIVLGATYYTNLPNGALISSFNPNLLIKNDQTLIRLDTFMAVKIFYESIVSDVSNVNDVDKANYDHALRRFEYEWEKALQLMNFYDLDQNAPQGPTTKLEENWTSDVDYFNNDRRYF*
Ga0129333_100070659	F011761	AGGAG	MAYVLGGGNNEADGFTTAIANFALRAMHESTGLVDYTTVVAPNQGNQYLVPQFAPITYQDYLPNANAANGGFGSNTGGAVEQNPSLGQGSITASPAVAATAFDIFYAWTTSFELAATLGAELGESYGEKVDQRVCDAFLSFKATPSNTNYSPTPQDGFARPTQLGAIELAEAGSNVSVGAGGTAGFSAATVLDAIRLIKQNYKVARLPGTPIIVLDSNGDAGGSVAGQTGSSMNRLLAELTGGAVNNPTYGGGSALSALGNELLANGKLDNVYGCRVLFTTFLNTASRTFLGSGPFNVLVGAYFHETALITVIKEGLQIKMGEKPGGLQMWLTGVAYMGAGVADPRRGGAINIQQ*