Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10006122 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10006122 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11372
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (45.83%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

11372

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (45.83%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002985	Metagenome / Metatranscriptome	515	Y
F003601	Metagenome / Metatranscriptome	477	Y
F014001	Metagenome / Metatranscriptome	266	Y
F015201	Metagenome / Metatranscriptome	256	Y
F020341	Metagenome	224	Y
F025487	Metagenome	201	Y
F067537	Metagenome / Metatranscriptome	125	N
F077223	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100061221	F003601	GGA	MDYTDDQLLAMAMANIGEYITDNSPQYILIEDDPRNEDDYDTWSYGTEPLPHDHTWQHTSIDVSVSPSEAD*
Ga0129333_1000612215	F020341	AGTAG	MKGFSSTQQHTRSSSYWVAVYAKDNDDEPIDIHKKILTYKPGQDKEVLMTNYCNSIMKINRNIWEILVHQGPSEVPDSGDQIVIRLSREPFKGCSQLQ*
Ga0129333_1000612217	F002985	N/A	MSYVIACWRWGTPHAITANNETNQFELIPLDSDVALNKIFSHPYRAGAQQILTWINDNDEDLACKELSIQDESRFRK*
Ga0129333_1000612224	F014001	N/A	MSTQTQLELNTAQAAIYTRSNIRRAFQDFDDTEVAGIYLRGDDCLVVRRDGSEQTYNRELIKVAYTNYTHRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYTHALGHL
Ga0129333_100061223	F077223	N/A	MQFFAAFKSFIPEFHAYSDDEKRYNIGATWTDNDGLRDYHNLEMRYVRNSEKLALQGEPQPDGSWKYVEPNGNVHVITAERARHFMETTQAHATMMCGMLERLKDAGLYNKLIDTEATPA
Ga0129333_100061224	F025487	AGG	MPSNTVDLDLVDQTIALIPEHGWTQVREAIITALVDNMPGAVIEQLTGSYDNFDRAEEILYSYYELPDRCYELIFDAFKIMTASNCLELLSKLNLEQS*
Ga0129333_100061226	F067537	N/A	MSTKRQFDYKIGDRVAERPKPHGIFTSNQQTRERLAEYRSQRYGEVVGITHKTTSRGAKQKFLLVRWDYLKTPTEHATARICPVSELERLTKEVIVPGE*
Ga0129333_100061228	F015201	GGAGG	MNKALIVYLVDRKKKVARKDVESNHAIKQLEKQTTATF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10006122

Overview

Ecosystem & Geography

Associated Families

Sequences