Scaffold Ga0129333_10005683

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10005683
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11741
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (29.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015080	Metagenome / Metatranscriptome	257	Y
F027828	Metagenome / Metatranscriptome	193	Y
F031454	Metagenome / Metatranscriptome	182	Y
F058096	Metagenome / Metatranscriptome	135	Y
F081258	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000568319	F027828	GGA	MMELTTKIMLDTVLTMEEILTEKQLTALQDILYFYKEFEMELYEYPPEDTLFTETQRELFDIFDIK*
Ga0129333_100056832	F015080	N/A	MMFDLLKFEPHNIPNAIAARHKFENDWEISVVAGPGLYGRIDEETYEVGIFRPNGNLTEDVSGWNSKEEVSAMMWVLSQL*
Ga0129333_1000568326	F031454	GGA	MHDSTLDLFCDHDSDEFADEYAMEIERKAAELEVTVDYYIAEFL*
Ga0129333_1000568327	F081258	N/A	MTFTFPRLSAGIYEVQKDSNTVGFIRKASAAKWIVTDVVDTPQHVTKTLKDAKDACINLIIFDGVDTTSEDVYNDSVEVDKVNPELNNVIEGSLHCYKQIEGTDEFEEVHPSVFGFGGEPTLEPIEF*
Ga0129333_100056833	F058096	N/A	MNAQLTVDECKVMWVVGALQRLATLGMIGPDIPLKLTPEAVDDYLEIDNHRDLLFESDFEIATIFNALAKDECDEEPNPDDVEAIVDLILEYKNNRTEIVKFALSHQSI*