Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10005629 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10005629 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11797
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (20.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11797

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (20.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F003601	Metagenome / Metatranscriptome	477	Y
F015587	Metagenome	253	Y
F025487	Metagenome	201	Y
F030408	Metagenome	185	Y
F035274	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000562910	F030408	N/A	MGLYIALIADRTGRYAHVWGNARTWSQFHDQLEDAGCEVIEDQSIEWDGCTRDEIAEDCLSVHQLLSDSDFVSH*
Ga0129333_1000562915	F001165	N/A	MTTPNTPRIPDSLDIQRLQAMQLVAKMKESAEKYGIGFIGGFIAPNGEKFVMTNMEDENDINALMPEDLK*
Ga0129333_1000562917	F001807	GGAG	MTVLAIEDVHYSDTHVTVTAIVDEMCLLYRATRFEPEEWAPALCTTTIELDPEEPIPLDEDGFCSYLDQLDPQWQLVDCN*
Ga0129333_1000562920	F003601	N/A	MSDYTDDQLLAMAMANIGEYITDNSPQYILIEDDPRNEEDYDTWDVGMEPIPGDQTWKSTAIDVESSEVND*
Ga0129333_1000562924	F025487	AGG	MPSNSVDLNLVDQTIALIPEQAWTQVRQAIITTLVDNMLGPMIEQLTGTYDDFDGAEEILYTYYQLPESQHELILDAFKVMGAINCLKLLNSLNLTQE*
Ga0129333_100056295	F015587	N/A	MTSLNIRKNTAQFLLATAAAVENAKVPTKAAMVGKLNEYRTRAAALIMPNDMAFVIQPKQGN*
Ga0129333_100056299	F035274	N/A	MITFDQTELNNAIELFQIDDYYISCKSTVCHLHWVARTEQACEYIDAFLECLDVLIDGQWVDTYGSHEQGNPVSLPDQDYIACRYILATI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10005629

Overview

Ecosystem & Geography

Associated Families

Sequences