Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10005573 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10005573 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11857
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (35.71%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11857

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (35.71%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F057983	Metagenome	135	N
F097203	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000557312	F001964	AGGAGG	MSRNLFAPPRFKVQVSGAIGWSDLKERVISYRTLEYPTRKEAESVARELNPGEFTQGRIRVVPVEMPEDYDVYPTPERTKP*
Ga0129333_1000557315	F002227	N/A	MKLTISSKTNAQTIIDLFNAIITGETEEHGATPMSIYDDDKHICSIVAANGEQILELIIEREAGDKLMQTCEPEDAS*
Ga0129333_1000557323	F097203	N/A	MNYPEQIPAAYSADSALERAYRLGWNHGHGIACHNVPSIGDAIDRSIDWIGLGKTVTAENIAEYHECLCFAAESGSREYSPFEFIAHEFNESDDASELWEAFESGVADSIQFDLKGYSYAELV*
Ga0129333_1000557326	F000922	N/A	MTENQWNQAKALYLSGKTWKAIGAELKLNFATLTSKASKEGITKVRREMRNTVSSKESVSLESLSALVRSKLAADAASTLERIEGYSLEGIKDEATRETILGSVAKRSALVFGWSETGEQASVSINLLGSMPDRSFEVNVSNESDLK*
Ga0129333_100055739	F057983	N/A	MTDQKIDILFASIEKMNQRLGSIEAMIKSNSQKISDIEDFLESGSDDSDCEGFGPKPERQPFNPNAETYTLELHHGPYTIRRDDGESDKEWQRRKDHLMDQRVTFLNGSGVNGTPEQVAYLQRIEERLGRKIFKYPLATT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10005573

Overview

Ecosystem & Geography

Associated Families

Sequences