Scaffold Ga0129333_10004430

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10004430
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13142
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F023575	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000443013	F023575	N/A	MAVSKGLALVYGAKGTITLYTPAGVALTTGAISTIESYDATHEADVEQIKNSAGETVAQVSANERISLNVTFIPSAASFAQAKLAAGLPAVNGYATIASSDGVTIGGGSIDGNYVYAGGGSVKFTSSGKVMVTVTVTKYLDASALTGNASTFTL*
Ga0129333_1000443014	F010835	AGGA	MNGVAMRTERALADWLAAQDWSASPLGTPACLTSYGHGAFNDPDLEDRMPNFPRIVIRSSTAVPVHPIDRTCELDVTATLQLSADDTSESDALLTVAAFENILQPLFVDDNISDLNTGDDDPSGGFTAFFATPTDFGVNDTSERARTFSRSMTIFAAANANT*
Ga0129333_1000443015	F013879	GGGGG	MTPTVTVDTSRFDAAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYYNRPVGSPAFDKKTGKKVGRSRQLRLVHLIAQAKNAKAGNEGLYGQKMKDAAAKLRRRAAGSVGYLKSCVTKGIKKLSPSFQQFGGTRRSKKGSAQVRSVAANQALVNLANQYGLPYENVSMHRGSSAYSYNAKAGFNPHSHVRMNIGLADDQIGKVESIYSKAMQQAYDDEARELEIHIAAKLAEAFDGSESKGIVVQ*
Ga0129333_1000443016	F007260	N/A	VNLIATSLQLGMTVLQGAMGNPSFLWQGSLVRCIPAAITDANNVINGGFQDNVQVRLLVKLADWRLADSTLVTVDATVWSADVGSTADRLLQESGNLILQENTDALQLTFGKMIPVVGRTLTYDGRTLRILSAKRDGTGAYYVLELGAKTK*
Ga0129333_1000443018	F017997	AGAAG	VNIIEQIVTALLKWLTGLAKTPPTVEDAKQDKELKAKLLDRIDRAGG*
Ga0129333_100044302	F013412	GGAGG	MRHLWARGFGKLYRDAELITTDDGKTFLLAVIEFEQRTLGNGKPYSQRVQFRSFDRDDMEIVDQLVAGTYIMFDGDCDATADKSQTGWWYANPRVTGRIHEISHAS*