Scaffold Ga0129333_10003998

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10003998
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13825
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (18.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062767	Metagenome	130	N
F067748	Metagenome	125	N
F072351	Metagenome / Metatranscriptome	121	N
F082706	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000399817	F067748	N/A	MNCLQDYIGLKGCTSGEPLSGLYINDYPGMSSELLDKIATPEQVSYVGMWNSAQAVSYVKMKRDVQAALFTSAEAQLDQVLFQTRKEFVQQWQQVQTVPAEAILKGTFVSIQGSKYLSLRVKQIYIFNAGAPVNGIDWYIYQTQDGKLLESGTADLVEGMNYIQVNKEFYSDFDKLNIMVAVDCTNLPTSTGMFSDYGWQQMDLECASRFSYLWRNGWSIFPVTAPLGYGFGDSWSQDNSQSGVYIDAQLLCSLDSFICQQREFLLDAWANLLCYQILWQKVASPRANYFSQGNREFTERAMATFLDGYQQSLAIWARQLNLRGEGLCFNCDNAGLIQQGFVRP*
Ga0129333_1000399826	F082706	N/A	MEELIGMLLSKLLDREIREGRHDYIKYAREKAEELEYHFENEYPEKLLNAQHPSEEPWMKEYRKRRWQAPTTTATGRVYTFLQKIQQADDFKITFQSDFQKTGIAERIGLQNNTLKYYVEDELPKTGSLETWLFNVFLKTYLMDSNAVVLTLPDYEDFIEDPAGTTTLDWSRPYPQIIESEDLIWEDEDFVITKAEEYVDMNRKKWDQFFCITTEGLMLFRQVNEYTYDQPFQVFILPYQFGYLPACKVGNIIYEEEDGKLVYDSVLAPCLPAWNEVLFRTDDLNILWAMHALPQKWALKMSPCKTCNGTGIRTNRKEEKVSCNDCSGSGRASSSPFGLMEINIDRVSAVNPTPLVPPVPPAGYIERPVETVKLFQEDIMQKEFQGFKAIGLELLGQIPAAQSGIAKEYDRKELNTFCFSVTVHLAQIYRKVCFYIMLQRYNALFASSLMDSDKIQAALPQITVPTDYDVMTADMVAEQLKKAVDSKFNPLITSGIEMDYVEKLYGENSIQKTYLKLLSSLDPLPFKSTDEKTVLLASNGCSQLDYILSANLAAFITQKVEEDALWYDKPFNVQRAEVYALAAEKQAQIRSGVVPLMDNNNGSDMSSEDSDNLGKLPLAIQQLSLAAERAGKAGNTALFETLNAKINNLLDEIG*
Ga0129333_100039983	F072351	N/A	MSLSTANVCPAILTSLSDNLINNPQNVGIMGGTLAALTDPSNLRAGQIIRQANDNGTGHSKEVRVVYKQRQLPSDVVDTKSCEAGPQMNYIEETLQINNFKQVSFTMTEAQLRTYCESYSQLVQITGANQPGMIAERAAGIGAAQGALSVVRELYNDIQLSTNALIQAVNDDLLLQIQAAAGNWYGGLTNPSYTVEGTDGSIYAAGLFAMKQNYMNTGFNGAPIIIGGAGALQRVWMNDSRYFGQGANGINFSTVRDNTGLAEFYFDPNVNTRLGSEDAAIVFAPGSIVFTPFLEYVGQFGNIGTMTRFTAPLPGLERVSADFRILPSECTEEYSVFISMNYDTFSPNDGMFPAGDVNEGVNGVFTADFVTAAP*
Ga0129333_100039987	F062767	GAG	MIVTKVTVESALKALCENLAGTFVNNMLNYGEAVESILEGSAGNYVTKDGQTYCAVNDTYPLVVFFVRESASTEAAPGGGRANSLLRTVNFKLIANSNYENAEFGITSIINRTKGITYAGTDYNSKAIANQYFGLPERNFETSFFSIDFSVTERISCEVAC*