Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10003301 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10003301 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15084
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (58.97%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15084

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (58.97%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010247	Metagenome / Metatranscriptome	306	Y
F010917	Metagenome	297	Y
F013082	Metagenome	274	Y
F019968	Metagenome / Metatranscriptome	226	Y
F024771	Metagenome	204	N
F037125	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000330110	F010247	AGGAG	MNVQGVIKYVYDNRLGKDGQANKFPNFKFGIGDQQIVLWSAILHPAIAKGKKVSVAVQASKKNGSLFVQTNEKKQPIIQELPSDEAKPDTSFDPEELEKELVEVAKDFDADLTVEPKKQFNKDEYMFTMALLKSGIESGKIGVTKEEIDLKIKDYKFLFQMNFHN*
Ga0129333_1000330113	F013082	AGGAG	MQTVQQEIDRLYLESKMNRYIVSNEASLYYDLCSVVDKTITLDQFYKLFPYHNPDINSDYWKQQHNRWKEIWKQDAV*
Ga0129333_1000330119	F019968	N/A	MRSSGVICSMSYFEMKMLVSVLSKVLLDNEVRGEHTKKRITNLISKLNNMITKQC*
Ga0129333_1000330128	F010917	N/A	MNLDKITFGSRIINLNLIDKEQASKKKIFGEFDCDSNTLTLDKSLDNIQMANTIIHEVCHLIHDEYKLDLSAKAEELVCNSTANGLCHILYQNQDLLEFLYKSLKKA*
Ga0129333_1000330133	F037125	N/A	MIDKKLRGTHDLEVIIYELRKEIDRLNEEVQAKQIYIKKLEHELDKSIRSEN*
Ga0129333_100033016	F024771	GAG	MNDKKYIENFNHESYENRTKNYLNISEDRFVQYCINRGYLYRKLGLNAVSDSQSFAESIIPLFAKLPTLIKAFPDYFVYAPKEAHKQEQFFVELKNATWEHGKTLTKIKVRDVKRYIYFEQAFTNYHTKFTICFPLADKIIFKSVDQILKLLPKSQLKCFPNDSIEYFEVQLN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10003301

Overview

Ecosystem & Geography

Associated Families

Sequences