Scaffold Ga0129333_10002701

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10002701
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16550
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (21.62%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009003	Metagenome / Metatranscriptome	324	Y
F011136	Metagenome / Metatranscriptome	294	Y
F026004	Metagenome	199	Y
F036096	Metagenome	170	Y
F037731	Metagenome	167	N
F040621	Metagenome	161	N
F042339	Metagenome	158	Y
F043894	Metagenome	155	N
F069698	Metagenome	123	N
F079655	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000270110	F036096	AGCAG	MKATLTFDLTDDQHSFDCAINGKKYYDILDEVRQHLRSLEKYQDLTEEQYEIIGKVREWLHEQLLDAGIADKF*
Ga0129333_1000270111	F079655	N/A	MVMSEEKKETAIRTLSKSLRRRFQGASVNVSWVELDAFMMKAQAREMTNLINSYNEGYTDCKAGLPNKAENESNTNV*
Ga0129333_1000270112	F009003	N/A	MKAKEKAWQLYSNYFDIVENGKQEGNLVEAHIKAINAALYCVDEALTNAPNDIMQDFEGTGEYYSVKAYYMHVKNEILKLNEGKNIKVSGHVEAGTH*
Ga0129333_100027013	F037731	GAG	MPTKKQTNAQPNKINLKGLRYKLELFDGFWSIPLAFLVFAISGTVSVAYFGDALISTEYIQYIVLAAMVMVFANFVVFLGIRFNFRALQREIYNKEVKYEINTYLSTWQKVVLYLLLYAFYFAAYLYILHLLMTVTA*
Ga0129333_1000270130	F043894	N/A	MRKHNKLNGLIARTVGSNAALLRAMRKSSTPISDRTLYNWLYDAKTIKLQQLINLSKAMNIPVCELIKSITIKHEGDE*
Ga0129333_1000270133	F011136	GAGG	MDRPEQDIVDIVCRGKVEAYINRALWLSWHSARSDYAIKYRKYYELHVEKQVEDTKQDETWMGAFIDGEYLYSAIGRLNEFDAILLRLYSKPDFDYKELSEQTGIPYAYLRTSIHRALKRIREYVKLQRSIAHSEREASDLQKM*
Ga0129333_1000270134	F040621	N/A	LHIQRERLAICKKCKFYNGTFGTCGTPLIGGTVNPEENDVTYYKEKIKLCGCFMDVKTKFRFTSCPAHKWFAIDMKPEEIRALDEFIQRVNKANKIEQDDLQLLYYWYSKVTKKHEKPSGCASCIRDLINEFRRQLGKVEQTK*
Ga0129333_100027015	F026004	N/A	MGKKTKLGIALACAIIALATIFSVRTCNRPVTNPAVKRLQDVNDSLYQIIQENNSKTDSLFAKIDSLQVHQDTIIQQQQITNEIYRNETYNILSATPNAANNQFRATLKKSDSLLKAGFYTRTYNLRSAAFQSELQ*
Ga0129333_100027016	F042339	N/A	MYWYRTAQEIDSLYQMERLKVTYYAKITGIQAASYETLAEIYKNKQSIEKAIATEKDNEISQLKKKNNRLIITNTALTLGVTALAFSTIYFAIL*
Ga0129333_100027017	F069698	N/A	MDFEPRDILTIVGGVVSLTGLYYALKRDVVKVSSALGKVESYHKREVTMLAESIKETKDEFNSKLNVMKEEQNKAIDKLEAKIDVIASQNMTISNNLAELAGYIRGTK*