Basic Information | |
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Taxon OID | 3300010354 Open in IMG/M |
Scaffold ID | Ga0129333_10002701 Open in IMG/M |
Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16550 |
Total Scaffold Genes | 37 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (21.62%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
Associated Families | 10 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 39.2637 | Long. (o) | -76.0017 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F009003 | Metagenome / Metatranscriptome | 324 | Y |
F011136 | Metagenome / Metatranscriptome | 294 | Y |
F026004 | Metagenome | 199 | Y |
F036096 | Metagenome | 170 | Y |
F037731 | Metagenome | 167 | N |
F040621 | Metagenome | 161 | N |
F042339 | Metagenome | 158 | Y |
F043894 | Metagenome | 155 | N |
F069698 | Metagenome | 123 | N |
F079655 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0129333_1000270110 | F036096 | AGCAG | MKATLTFDLTDDQHSFDCAINGKKYYDILDEVRQHLRSLEKYQDLTEEQYEIIGKVREWLHEQLLDAGIADKF* |
Ga0129333_1000270111 | F079655 | N/A | MVMSEEKKETAIRTLSKSLRRRFQGASVNVSWVELDAFMMKAQAREMTNLINSYNEGYTDCKAGLPNKAENESNTNV* |
Ga0129333_1000270112 | F009003 | N/A | MKAKEKAWQLYSNYFDIVENGKQEGNLVEAHIKAINAALYCVDEALTNAPNDIMQDFEGTGEYYSVKAYYMHVKNEILKLNEGKNIKVSGHVEAGTH* |
Ga0129333_100027013 | F037731 | GAG | MPTKKQTNAQPNKINLKGLRYKLELFDGFWSIPLAFLVFAISGTVSVAYFGDALISTEYIQYIVLAAMVMVFANFVVFLGIRFNFRALQREIYNKEVKYEINTYLSTWQKVVLYLLLYAFYFAAYLYILHLLMTVTA* |
Ga0129333_1000270130 | F043894 | N/A | MRKHNKLNGLIARTVGSNAALLRAMRKSSTPISDRTLYNWLYDAKTIKLQQLINLSKAMNIPVCELIKSITIKHEGDE* |
Ga0129333_1000270133 | F011136 | GAGG | MDRPEQDIVDIVCRGKVEAYINRALWLSWHSARSDYAIKYRKYYELHVEKQVEDTKQDETWMGAFIDGEYLYSAIGRLNEFDAILLRLYSKPDFDYKELSEQTGIPYAYLRTSIHRALKRIREYVKLQRSIAHSEREASDLQKM* |
Ga0129333_1000270134 | F040621 | N/A | LHIQRERLAICKKCKFYNGTFGTCGTPLIGGTVNPEENDVTYYKEKIKLCGCFMDVKTKFRFTSCPAHKWFAIDMKPEEIRALDEFIQRVNKANKIEQDDLQLLYYWYSKVTKKHEKPSGCASCIRDLINEFRRQLGKVEQTK* |
Ga0129333_100027015 | F026004 | N/A | MGKKTKLGIALACAIIALATIFSVRTCNRPVTNPAVKRLQDVNDSLYQIIQENNSKTDSLFAKIDSLQVHQDTIIQQQQITNEIYRNETYNILSATPNAANNQFRATLKKSDSLLKAGFYTRTYNLRSAAFQSELQ* |
Ga0129333_100027016 | F042339 | N/A | MYWYRTAQEIDSLYQMERLKVTYYAKITGIQAASYETLAEIYKNKQSIEKAIATEKDNEISQLKKKNNRLIITNTALTLGVTALAFSTIYFAIL* |
Ga0129333_100027017 | F069698 | N/A | MDFEPRDILTIVGGVVSLTGLYYALKRDVVKVSSALGKVESYHKREVTMLAESIKETKDEFNSKLNVMKEEQNKAIDKLEAKIDVIASQNMTISNNLAELAGYIRGTK* |
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