Scaffold Ga0129333_10002020

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10002020
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18753
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (52.54%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F004208	Metagenome / Metatranscriptome	448	Y
F004255	Metagenome / Metatranscriptome	446	Y
F007569	Metagenome / Metatranscriptome	348	Y
F020144	Metagenome / Metatranscriptome	225	Y
F031466	Metagenome / Metatranscriptome	182	Y
F041726	Metagenome / Metatranscriptome	159	Y
F085168	Metagenome	111	Y
F099268	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000202012	F004255	N/A	MNEKSKIFYSVWHCSYRRRTLYKGTPREHREHETVRMCLDMKDVKFYQFDTEKPRYLA*
Ga0129333_1000202013	F007569	GGA	MNFTSEQYKLIYNSVRRYQIEKTVLNSAEYQECNEILDELFDSVYTQKAEQPT*
Ga0129333_1000202015	F031466	GAG	MYKKSLAMNLVILGLLFSCVIAIIVSGYNHGDMHLSKVLENIKK*
Ga0129333_1000202020	F085168	N/A	MIRHLRIWLWRIVSELEQRLYPYEEEDVGDYYYTIKNDETGESYMIIEWIKSFDERIIRLQDEMILVQSQLRSMGNDQKVY*
Ga0129333_1000202026	F000345	AGGA	MATSNDFGKALQEWWDSDACKEMQKANEEAKQRAVGKYFMLSEEDKLDMVQAICTIMCNAEKEGTSHRGLQDKLGIYPTGFWIDNLMDVHNALWSYYHDKKQEQELKDDLDALEDFIKNNENK*
Ga0129333_1000202038	F041726	N/A	MNTYRMLIEYWVPDENENLFEEKIIQSRSSCGKIGDDYLAQDRTNLIRSVEVTPI*
Ga0129333_100020204	F099268	AGG	MRLIDRYNEYYNDECAAAPWGSLTSMEHLQATTIRAVLYAFARKYNMTDKIYVEDLKLLANQIESQGEESNRKHRTVMKEAQERHGGDLDTL*
Ga0129333_1000202044	F000744	GGA	MTETQVNLNVHEIGIILSALQNLEIVDERHIARDYGSAPALYNKLYTLWERMDRSKVGLVNDVVPSF*
Ga0129333_100020205	F020144	N/A	MSNFYTNLPGTDVVRSKIDVFTLHDEAENQTHRVELTVDNDGVFITSCEGGAREDMSISHKDVAIAVARAILEAYGEV*
Ga0129333_100020207	F004208	AGGAG	MTYGLNSEKPAFSYTREELFSCITKIVSHPHTHITSHDQSRALAIMLVFEDYFSNYTESDNNGGHCVYERDELDFEDFVRYKLNLEYYHPVGVDEVLK*