Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10001553 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10001553 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20861
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (38.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

20861

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (38.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F003889	Metagenome	463	Y
F007026	Metagenome	359	Y
F029735	Metagenome	187	Y
F056536	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000155320	F029735	GGA	MAKDHRLELGRYFDYTKDPFIKKRQLNFDDLFQAKASTGAAPWMPSRFEQRDLLRRVQTRKLQLNPSLNFVGTTPEQYEVFADIGRFVRSESYDFENGRPLTPLRPEEQPGFSDVWVEAYGISPTINPDKRASNPMPRIKNPDPKGYLMAAAEKKVENEVENNKSVAQLLSEKTSDNTEKTEQEKKT*
Ga0129333_1000155326	F056536	N/A	MICYYPYEGATERITWHGGQSTMLHYQVQVDSYNGDPDWIERYSQTLMGGIPCGTKELLAAMSEYYQDISQLHLDTMSEAAF*
Ga0129333_1000155332	F007026	AGG	VNKPDWYLEAYVKPTMEQTQKYPELTWTKNEYHQLQVCLDALKNIRNREDRRHQMDEHLDPHTRDVLDEVISMLSDELDYDPTPNELGEPPITASEMHAAAWKEHQEMHR*
Ga0129333_1000155333	F001165	N/A	MPTPNTPRIPDSIDIERLQAMQLVAKMKESADKHGIGFIGGFVAPDGQKFIMTNMDDNDAMALMPEDLK*
Ga0129333_1000155335	F001807	GGAG	MTVLAIEHTQFTDTHVTVTAVVDEMRLLYRATRFDPEEWAPALCQATIELDPEEPIPLDEDGFCSYLDDLDPQWQLVELD*
Ga0129333_100015534	F003889	N/A	VGPEYIAIGLTAIVSAITGGSWVAGKILGRQNDQIQQAFNYIGSQKRRIDVLEDDLKRLPIEYVLKVDFIREIQQMHDNFNQINNKLDKLMEKLFEAK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10001553

Overview

Ecosystem & Geography

Associated Families

Sequences