Scaffold Ga0129333_10001363

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10001363
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22053
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (30.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F002867	Metagenome / Metatranscriptome	524	Y
F036198	Metagenome / Metatranscriptome	170	Y
F087062	Metagenome	110	Y
F103129	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100013632	F103129	AGCAG	MALTTSLAQTNIGIPMADTYARITLMRCDKEQTLIQVSHYANADARNADAQPVFDHTMFAPTSELQPGDNPLAIGYAWLKTQPEYADAADC*
Ga0129333_100013633	F002317	N/A	MEHHEEALITAKRPESPFTQMVPALLTAAVVGLAGLFMQVAKLDQSVNTVAVDIQELKNDSKERLSDLEGRVRHIEMTLGNSK*
Ga0129333_1000136333	F087062	N/A	MTDPAFNLAQLDSRPNWYDHLSQVEAAMADQYRTEELRRRAGWYADEGGWYSPDGVHEAEWEAEARPLPEDEGYVDFWSAYIHYEALDSAPTV*
Ga0129333_1000136341	F036198	N/A	MTIDPTTEQRRQNYLDALYTESGRTCGTYTGLYQERLTELVQRDMQELLGDA*
Ga0129333_100013635	F002867	N/A	MSIISTTDYGNGYTLDQLENHKGELYYRACKNSICRYAEDHYVAVMYLENMGWDPKQEPLA*