Scaffold Ga0129333_10001338

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10001338
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22202
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004276	Metagenome / Metatranscriptome	445	Y
F014851	Metagenome / Metatranscriptome	259	Y
F026214	Metagenome / Metatranscriptome	198	Y
F060632	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000133811	F014851	N/A	MKIRELLETATAGSTSAANVSVGVFYPNKSGKQPKKKKDGTAPNALDIKGLSLFGGSTIKR*
Ga0129333_1000133822	F026214	AGGA	MKNYKDYKYFENRPDVVKVWDDLEAYHDWCRFELCDFNPADLYRKDSKNYQSYLASKRGRRSNQGNRPRFEKRRNEQNISH*
Ga0129333_1000133831	F060632	AGGA	MVRITVPWQNQSNSWWNETCAGIIEHFGLPGGKYVTEISAECMHFDFNDEKDALLCKIMISDQI*
Ga0129333_100013385	F004276	AGGAG	MLLKEMFSAIGAPKDENQDINWLDDLKFFIDNDDTMLNQLFFPAIKKHKEHKGNPNVYKIYIHPLQKCKEAYCEKFEIDHPEQKFPKEKIIELAKYIASEQEKFISKGDYQ*