Scaffold Ga0129333_10001046

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10001046
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24558
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (69.23%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F004132	Metagenome / Metatranscriptome	451	Y
F005348	Metagenome / Metatranscriptome	403	Y
F047494	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000104610	F000808	AGGAG	MEYNYSLTTSYDGELVHTLRVSDMLEAVNAWDKCIDHGNAKEYATYNLSDLTGKMYTKTFYANGKVSVK*
Ga0129333_1000104614	F005348	AGG	MINSVMRFDCDECSGSGLIFWGNGLDYDVESCECENFALGDLF*
Ga0129333_1000104619	F047494	AGGTGG	MTTLEITKCVKHTPNKNAISIVNDERFTFCESCEQNITSHYREDNDFMSYWTSWKVGK*
Ga0129333_100010462	F004132	GAG	MTQEQLSVPYNPNLLVTYKYIPETYAAPESPTFMTDKVTEIEWALHNGRTTQKQLAERRLDISWLEDQIVEWHDPNYTKHDVLQAIMEHFGFNPTKQVEVQGTVSFSGTINIPLSEIEDFDLSNVTIDVDLNSYDYDADLNVDDVSLEDAY*
Ga0129333_100010464	F000684	AGGA	MTLGGYTYQLGDLFTTSKTGITGRIVKFSPINSKLTRVSLQLANGSRRLAMVSTSK*
Ga0129333_100010468	F003393	GAGG	MRTIEKDDIIPIMDYYKVDVLTAGQLMVDDNILVDGEVVSITEITSLADGYSLEIINDFGEREVIEVEEYQQFDLMVLK*