Scaffold Ga0129333_10000945

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10000945
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25694
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (48.65%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F001968	Metagenome / Metatranscriptome	610	Y
F004208	Metagenome / Metatranscriptome	448	Y
F004314	Metagenome / Metatranscriptome	444	Y
F008402	Metagenome / Metatranscriptome	334	Y
F016800	Metagenome / Metatranscriptome	244	Y
F063620	Metagenome / Metatranscriptome	129	N
F067687	Metagenome / Metatranscriptome	125	N
F071779	Metagenome / Metatranscriptome	122	Y
F075870	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000094510	F001968	N/A	MFDELWAEIQDMPGEIFDLDIPELREDFDFDGYIAADYDF*
Ga0129333_1000094523	F071779	GAG	MATTYRVIGFGQNEHGFFNYPAFCSSVGYAQGFYNAHLEDPEMDGAVLIQVDHETWKVIKEFGTENMSIVYGPLGNFKVERAPQLTIC*
Ga0129333_1000094525	F004314	GGAGG	MYDDYDLDYTLSYDYAHDLDTEDLDEDYARDTCNYQELSYRHYA*
Ga0129333_1000094541	F067687	N/A	MTNLSPQAQAIVDAADEVFSHGGTIREGFAAALRVLADNVAPENYACFSGHREWDEALETRNESIREAILDIATELEAL*
Ga0129333_1000094545	F063620	GGA	MTNSITPKVAYIPLEYHMSVEDFLEVWKDMEMEDEPTQEDYDTLVFDRGLSYFHDMMGRQLENYIRLEDA*
Ga0129333_1000094546	F016800	AGGA	MLDAYTDYPIEGLGDIEFEKAPIRKCTILTWDRNKYCDVLVYFVDEDGDLRGYVTNFKQWYLYKNEARLDDGVQFTDDELKTLPWTY*
Ga0129333_1000094552	F000345	GAGG	MTEPNEFGKALQEWWDSDTFKKLQEENKKSQQRAVGKYFMLSEEDKLDMVEAICYIMCKAENEGCSHRGLMDALGIYPAGFWVNNLMDVHNSLWSFYHDKNQEQEFKCDLDALDNFIEKQQS*
Ga0129333_1000094553	F075870	GGA	MKKKTDENEFPHSGFPVKVIHKDGKDLKDTKTCYFQCEEHAKKYIDRCKFKKKNYTLIIKEEND*
Ga0129333_1000094564	F004208	GAGG	MTYKLNEEAKAFSYTREELFECITKIVAHPHKTITEHDQSRALAIMVVIDDYFSNYTQSDNNGGHCVYECDAMDFTDFVRFKLCIDDYDAVDVDEVLK*
Ga0129333_1000094569	F008402	GGAGG	MTIEITNQVRIQEHSDFWYTVEDIHLDVGCEGCTISYWEFIKDTGDKRVQHICMNNEEALALADAIYKLFKRN*