Scaffold Ga0129333_10000769

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10000769
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27955
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (81.58%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015703	Metagenome / Metatranscriptome	252	Y
F041720	Metagenome	159	Y
F048791	Metagenome / Metatranscriptome	147	Y
F069774	Metagenome	123	Y
F074495	Metagenome	119	Y
F078215	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000076918	F015703	N/A	VKRYFNGFLDSLDGELFEIKYDQYRNGRMVVEIEQNPNGKGWKPSGLSVTKAKWFIYVFSAQAFIAVEVARLKKYLEINNKIPVKEFAKFSANPTKGYLLFPEDVSKLLSSDLYD*
Ga0129333_1000076927	F078215	GGAG	MAFDPSVFEETRRKLFNQFGQQAALTAYQKYLAETRGQRPIVQLEEAAFGTTPTGRLGDVPRLTSSYGRRGLTGISTRSGIYNRALQSYAKERAKQLGYAREDLAGTMRGYDLAQAQGLASYEQGIADLESLKARQIAADAQALLNLR*
Ga0129333_1000076934	F048791	AGGAG	MAINFSNANLTLAQMRTFVGELSDLDIGFDENDDISTDLVNGFIKEGFQKVVALSNRWPYYQTSYTFGVTEGFRSYSSFVQIQPTAIGSPTKAITDISQIISVVNSDANFQGNALVYIDQARAESIWVGTQDQEGVPAYFSVWANQVNLWPKPDNNYSFTLRGFRNPSLTWMQNEGDPIDISPQLQLPLINYVMARIFQFQEDPEMANEYMRSFERGIAIIQGNLTAPSSNRQLIMSGGLQLTPYDWWWSDTPNLRVLPGAPYPLGVAL*
Ga0129333_1000076935	F074495	AGGA	MFYLQTKENNMNKQTQGVGQGLAGTQPYGAVEGARHISNGRADWHGQGVEIAPPSGVAYGGVHYKNGLCQAMNKKEEQCKAPKAKGTDYCIGHLNALKKMGENQDAALDPKE*
Ga0129333_100007695	F069774	AGCAGG	MVRAFNTLKRELKRQQDALLMDHQQEDVISGGDSASIQFHFLLNASTTPLAWNTAAAGVFDANQGATGTADVYFEPRRDFYEPGRGF*
Ga0129333_100007697	F041720	GGA	MSKTPRLFLSETQESYLAWLLSPEDSRTPKTKKDFAELNNIHINTLGLWEKNKVFKERWELGVKGMAQSPERTQALLDALYLKGVSGDVRSAELYLKATGFMQQTQTINLNNTSSVKELSDDELQSMILELSQKKQPTISISKMGKEDAEEETDN*