Scaffold Ga0129333_10000711

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10000711
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28661
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (58.97%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F018919	Metagenome / Metatranscriptome	232	Y
F020001	Metagenome / Metatranscriptome	226	Y
F025981	Metagenome	199	Y
F034542	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000071110	F034542	AGGCGG	VARRKGSDNFGFKSSKANPSFEKPLGITGADNPNQLINPLPFKRRFRPATGTKDFSILSDYDYASLWVRWRRGYELAMYSQQAYDGMTYSFKYYLLGTPGVGLFLPGIAFMYPSTRPDMRMWMVGIRPRDSFNFLNFGYAIAAVTDYDADTYAVKLNSNFGAPISFFTGEVLSNRFTAAGTDKQYGFNNYTVKAIGINNVPVSNPGYAPIYNTLFLSHAKDNSWAVINANTMAVPATGPPAVGEYLTTEMRSQCTCPDFLGREGFNLYDLSIRRKYPYTRVQNFDPGFYDGGPDLGSERIQQSSDSPGWARTFGFIYLNQIYNIPEYTEAVYSDPNVYYYQPRWCKHIYAAMWDLKFRFGQNSTSSPWLPQPNDEPMNEYYREKFDVDLAKQFSFFKRERDLVWWQRYSPAKDSMPQQMMYPDMYNMMSKTLNSGGVNSTQTLEANSFQMFTVDEFDPFAPVSLENLNVYDGGTYANGVLVNQPVNTFNGGQYINGQLVPAPSFPINGGVYT*
Ga0129333_1000071113	F020001	GAG	MSDGKTLLTIAETAELLNCSSGFVRKRIALAEANQPGGWPKSVYVNLQPNGAKSLYRVNKSALEEYLQGTTSAKVETAEATSTAAACSF*
Ga0129333_1000071120	F025981	N/A	MDLVVSKELLDIIRSIDTSLQILANTKTGNVTTAFISKKAVAARLGVQPVVIDKLVYQGLTSGGTSGLVEGRHYCKLDPSENNISNFLFDSTRVLSDAWKNFTGYQDA*
Ga0129333_100007113	F018919	AGGAGG	MAINPAQISVTKIYPGNYTNVLRYWHESKSVDFLNENGSPETLANQPVGGPVGVIFRPGWIAQQAVGYVDLSYQALGTNNQLDYYTTPWGSGQNGAPQPFLNGNVIIPSPDFHKDIRADITNGITVPSGAYVYRVGLRLDGGDVVSSGVAGGSATPTLGLGPNVGVGLSTTPSVSGFFATVAGSNSRIENGSFNSSNAWNPANMHVVTADTTYKLYTVGNLGGTAASGLAQASGVYDPRAQSGKLSAKNKALALCEVCWLVPDEPPKRDDVALQPAGLVESSIYTSTTPA*
Ga0129333_100007119	F001215	GAGG	MSTTSTNKQPCLIDRPFLRGARINNSTPTCNPTNPNLTDLIQLVRVGDLPSEDGALVEDISIVSNEDYPDNSGIRTADIALYVYAPNQAAPSTSAALMVGRFEVGLSGSTFGYPQQVQLLGINAPVPQVGDTSLVAPIQIGKGEGLYLEKGYILCAGYIGTGPAGASGVRASGGLSPSGITILAQGGFY*