Scaffold Ga0129333_10000710

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10000710
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28666
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (74.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F015212	Metagenome / Metatranscriptome	256	Y
F021091	Metagenome / Metatranscriptome	220	Y
F073185	Metagenome / Metatranscriptome	120	Y
F098749	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000071011	F021091	N/A	MNDWKKYTDVNGDFQLGNFLYRTINELMKQSLDMGTLLSNDQQKLRAYKEQTKKLFKNKWFDIASALEFFEILEPCSCRVDIEEIYCDICKGSRYRIASYLTSDEIREVGIFLNAAQSAELAEKLQKGLVKALDEIGYGEVPQV*
Ga0129333_1000071021	F073185	N/A	MNLSEVNKMSEEVIETKEFSIEIKISNKDLQYKSDFSEPETIFWLEAVKSLIIGKSFNQDGFVQS*
Ga0129333_1000071024	F098749	GAG	MKLLIGCPIYKRSWILPLWIRGIITQSLDMSNIGFVFETAPDDESTIASLEAWKKYDKNIPYFNIKIREDIPHFEHQENGRQWTVSRYENMTSLRNSLLNTVKEVEPDYYFSLDSDILLENQSTIELLIAHIKDGADAVSPLMFMTPHNILYPSVMSWRSENDSMAYRKDSYPLGTYFQSDVIMAAKMMSKKVYSNTEYSIHNQGEDVGWSLNCRKNQYKLFCASYIYCPHIMNQHMLSDYLKTGDDRKLALENYSKL*
Ga0129333_1000071026	F001360	AGGAG	MSLAKFRKVHSKTGAGRFVVSEGIAPSAYLLPHPGLPTWYNDSEDDRFEIVIPKGTILSVVADSNGDARIVPANGTSASKAWGDSMPSTWDPLDGATPNYSSGATDTVTVAARSIPIGCAQYDLYRPFDKGTSQGAGFITRGYVEYPMVTGLNDDVTIGSVVRSDSMGRPVLAAAADFYSSSAAYSYLQVGKVIEVEKFATNFDDGLLSYMQLPSDPGALKTVYELTRAGTYSGKLGIRANLDVHNVIGAFRVNLTL*
Ga0129333_1000071030	F015212	AGGA	MSTAYPASLDNFINPTATDKLNSVTVPHHQQHADLNDAVEAIETVLGLSPAGSHLTVKDRIIAAESSIATQSVLNGLTDVTITSANPGDVLRYNGSAWVNYDEENLVDGGNF*