Scaffold Ga0129333_10000685

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10000685
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29072
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (87.04%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F002546	Metagenome / Metatranscriptome	549	Y
F002622	Metagenome / Metatranscriptome	542	Y
F003582	Metagenome / Metatranscriptome	478	Y
F004006	Metagenome / Metatranscriptome	457	Y
F010248	Metagenome / Metatranscriptome	306	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000068530	F002622	AGGAG	MQEPDESDEKLAYYLEVGAVSLEGMDENGEMIYSITELAKEIAPELWQSHIEYVDRSLMELYEQGLVEVEYDENLEATLHLTEEGHRVAKEKGLVEMDFNRDIPND*
Ga0129333_1000068537	F002546	AGGA	LFVTQPIGGQSENDKMFFNVLGSVATFITGTLAGLLIGQSGAKDIMKAQLDNKEMDAKNTQADKKLEAEIDAVAARLAAKPDGAMPEVQPVDTDWDKD*
Ga0129333_1000068539	F003582	GGA	MNTYKVKLEVEAEVEAFDEGDALDYANDIFGIDDEIKNVKVISVKEK*
Ga0129333_1000068543	F000473	AGAAG	MFINKDKDHFKYGINQWTGEPNKPVFYTEEMKKAVHQVKKPSMLLMDIVMYPDFLALRLYEDNFLQFDGVKKEMVIDYVTKIKRLLESYGVRCELEGKPSERVL*
Ga0129333_1000068545	F000671	GAGG	MEKILCYSCNKSKNKLDVKKSSLLPINLFICESCISAKLEPRWVVILAGRSQGPDYVKEFIIKRRYIGNEITASELLV*
Ga0129333_1000068546	F002060	N/A	MDYTSIVIAISAAVLSGMGTAIIAGLKENKREKVRQYEREQDHLKLEVKDLKIELYKIERELTEWKDKYYNAIQELIGVKAELEETLIKLSFIDHQIEDMQGLDREF*
Ga0129333_1000068549	F010248	GAG	VRKSERIRLLEMEMLRMQFQIEYVSRAIDILLQENKIAGPEMDAGKWYNTKLNKDK*
Ga0129333_100006859	F004006	AGGA	MTENVDGLITSISMNQVLIAILEEYGKLTVPTLRFLDAGSIDKELVIDYDETIPSFTFSLRDKIEQQ*