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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010354 Open in IMG/M |
| Scaffold ID | Ga0129333_10000615 Open in IMG/M |
| Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 30019 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (83.72%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Chesapeake Bay | |||||||
| Coordinates | Lat. (o) | 39.2637 | Long. (o) | -76.0017 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001531 | Metagenome / Metatranscriptome | 676 | Y |
| F006544 | Metagenome / Metatranscriptome | 370 | Y |
| F018684 | Metagenome / Metatranscriptome | 233 | Y |
| F052382 | Metagenome | 142 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0129333_1000061512 | F052382 | N/A | MSSYSKRKGSTFETDVVKWLRSKDVLAERLTRAGAKDEGDIVAFLDGIANILELKATKKLDLPQFWREAEVEAENYAKARGLKEVPNKFVIVKRRQAGINKAWVVEDFEQWIKRAGK* |
| Ga0129333_1000061521 | F001531 | GGA | VDWDSIEKWDYIVTAVASEYHKKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGEKDAKNLIYRSLRNQALDYCQRWKAKSIGYDVTDLHYYEPEIVEALLPPVLRGEYGVTHKLNLGRPGRPSAPAEGGNLTIMMLEVDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLNRAIRRLINKIGGYKPYNDVDTEPSQEESQELEAQPPQE* |
| Ga0129333_1000061537 | F006544 | AGGAGG | MTTLAAIQGNGWSVIGSDSRSSDEYGRPIDMATNKIIENNGILIAGSGAGRGSNLLQFGWKPPKPKIGEDLDLFMTKKFIPSMRKLCIDAGYDMKEDGDAAAHDSQFIISIRGVLYPIFEDYSWDRDTRGIYYSGSGGDIAIGAMAALNVDRVTSAIAAEKIIKKAIEISTKWDIYSSGPIITKIQYSR* |
| Ga0129333_100006158 | F018684 | N/A | MRKTMANEDWKLQVSYKTPSGDMINIRANTADELSVLLEGIGDYSPQIAATQQKVVGAYNLTPLSTSSSTTNTRPSNYSAPTPVSAASGTAAPVCKHGARIWREGISKASGKPYAFWSCPSPQGTPDQCKPVN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |