Scaffold Ga0129333_10000469

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10000469
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33188
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (25.53%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002391	Metagenome / Metatranscriptome	564	Y
F003127	Metagenome / Metatranscriptome	506	Y
F036698	Metagenome	169	Y
F057881	Metagenome	135	N
F066704	Metagenome	126	N
F075866	Metagenome	118	N
F080976	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000046912	F003127	N/A	MACNMTAGYNDRTCTNGKGGIKSVLLFPLGNVTGSNVTATNEVDSLTVSGEVFLYKLKSNLSSYTAPIRVNKGNGTLWYEQTLTMILASDTKELRSEIHLLGQNEVVALVEKADGTVVALGFGEGLQIAEASAYGSGVLKSDRLGHDIILGGLENDPVPDVDPAVYASLLAQQSPSI*
Ga0129333_1000046923	F080976	N/A	MKKPGRPKKNLNINIDTKNVDVKITRKDGVTDIKVDTPKVDVDLHKDNEGKTIKIDSDKVDVIIDKGEVKVDVNEQSGLLGKIAKLIFRKKLP*
Ga0129333_1000046926	F036698	GAG	MKRFRIWLEDEMEEEGGSWWNCIMDENGCLFDPNYPDEERDTLQWYIEHGYKVEEL*
Ga0129333_1000046938	F066704	N/A	VEFWKKEAYIIAGKITGGNPISSDLVSHVYLLVHELSIRQEDLPRVFARYAYNQYNWRDSTFNKLFKTHDQLPDMDSKESDDESYEVTKAQELLDDYLHQSPEDDQKMFTKEITKMHLMGMTYREIRTLTGISLDTIHLAIKQFKYDLSDYNNSSNRICEGSPELQSSEY*
Ga0129333_100004694	F002391	N/A	MAIANSVLTAQQGTFIVNNTVAKTVDHDAIVVLEDTVFSAIRVAGTDVKSTYIAATGTAVKAGTIIRPINGAKFSGVTLTSGSVCLVL*
Ga0129333_1000046945	F057881	N/A	MKQLDIKLPNSLSSCTPEQMTRWLMMAEAMKEQKDDITQLLIFQCQLLSLFSGESINKIKRADIESIQVAANHLLQLLVSYKYQEPKSDIEINGKAYYFEKNFAHVSTGQIIDLKLIEDISQDPCQALAIMYVEKGMEYCQEDERGRVLNPNEHRYKEFKDHFPGDEFLNFFSFFLDLSEKRRLAILGIQMARQRMEMMMMEQDLKIQSGLVGPLSSIDYPKKWESVWKRLHNSLM*
Ga0129333_1000046946	F075866	N/A	MADFDFLEDFGVTAQDAEQPKNAYDRFIIELSNKLAEEFRDYTKKVAQNTGALAASIIPVPTGQLSFRLEAEDYYPFVDEGVNAVGTNNYGSQFSFNYPGVSQRMATAISQWKGLDMSHAYAVASNIKQRGLQPKRITDNVINDQVLERIGRDLAELTGLMFEINFTRNGSNNI*