NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129333_10000420

Scaffold Ga0129333_10000420


Overview

Basic Information
Taxon OID3300010354 Open in IMG/M
Scaffold IDGa0129333_10000420 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34097
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (42.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)39.2637Long. (o)-76.0017Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013172Metagenome / Metatranscriptome273Y
F020890Metagenome / Metatranscriptome221Y
F021974Metagenome / Metatranscriptome216Y
F033413Metagenome / Metatranscriptome177Y
F041726Metagenome / Metatranscriptome159Y
F105081Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0129333_100004201F033413N/AMSTSTETKKMTETLFHKNINLTGDFITDFTLTFKSSTFDKYTRNDGKVYIKHSVDRDFKNDVFAVEAMIYEYKGCWVGNQKNFGSFDNFADAVACARNVQLSEDSITQNEAFALMCN*
Ga0129333_1000042022F013172GGAMAKTEQNYWILKLNDAAARRADKLESEGVTVDTSTHEGRKLIGYNYLELANYYES*
Ga0129333_1000042023F020890N/AMDWFDDTQIEEFSSFDFVEEMNEGLFDEVNDDKTFQAFLNSNWDF*
Ga0129333_100004204F105081N/AMTLTQDQLYKLTQLYAERVVDGMDVRDLCAFAIDTIVDNMSDYKESELLEELSHYYDNEELEELVESVTNVE*
Ga0129333_100004208F041726N/AMNNYRLLIEYKVPNTAETYYEERFIKSRSSCGKIADDYLAQDRTNLIRSVEVTPV*
Ga0129333_100004209F021974N/AMSNTIVSEIYSYHTNWKEGKVNQMWIEQVTDKECDNLYVAVAHNPRNGSTMEMSNPRTSYHETLNWVRNWCGTFCILPA*
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