Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10000257 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10000257 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39601
Total Scaffold Genes	63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (49.21%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

39601

Total Scaffold Genes

63 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (49.21%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002867	Metagenome / Metatranscriptome	524	Y
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006785	Metagenome / Metatranscriptome	364	Y
F010026	Metagenome / Metatranscriptome	309	Y
F011387	Metagenome / Metatranscriptome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000025725	F011387	GGAG	MAAVSILSTDRYTNLLEHHGNTMSAVNDWMEVPAQSSSYTFAASVTGGANFQLALECSFNGNGNWFTIDNGKTINSNGEYAYFYDGKPAAKIRMRIASISSGTPSINPHIAVAYHG*
Ga0129333_1000025735	F006785	GGAGG	VSGGDWNTRKERSALQRDTRELEREQIRLEKRQLRDLRWAIERSTVKATDWADLLTLQQRHGKEGPLQLWRELVPYWRDCQRVNRGADIPAELFPQIAGLFTRTDDQPPAPATRRKPAKGASRKTRSDAGKARKCTSAPV*
Ga0129333_1000025751	F004722	GAG	MSPARTGRELVMEWLMREVRQAKTADLHRAAAFLEWARGIRKGCSKQRNGARAAQSNAWRKKVDDDVRWGV*
Ga0129333_1000025756	F003805	N/A	MRPIEHSTESSFHKAATDQWLIDRFNSGDYRGLLEAALVLNTLHQLEKTKANWAIREAADNLAGQFGMDRDSA*
Ga0129333_1000025760	F002867	GAG	MAVIHVTDHGNGYRLEQLMNERGELYYRACKDSVCRYAEDHYIAVMYLEGMGWDPKQQDLQ*
Ga0129333_1000025762	F010026	AGCAG	MAVKSKVGAKAVQHQPGAPKLTRQGQGQRSKPNHGRKKLRGQGKG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10000257

Overview

Ecosystem & Geography

Associated Families

Sequences