Scaffold Ga0129333_10000086

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10000086
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56955
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (62.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F007028	Metagenome / Metatranscriptome	359	Y
F007312	Metagenome / Metatranscriptome	353	Y
F012571	Metagenome	279	Y
F026542	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000008618	F007312	AGGAG	MATFYVGPRPVLKGRSTADMVNVFKGTAGTYSFYPLFAKGLLDGAPDNHHTPGTGYHPGNVLLSQLFTGSTLYVGTTPLAGTFADGAGYEGARFKPFEFKGLVGAAAFPSGFGHADRVSEYSYNNYIFDGVTSSNIFAGTGHAARTEAEGAPASFGVFRPNDVHGVASAKVFTSGYGQANTESDYGRNKVLEYRGLDSAKAL*
Ga0129333_1000008638	F012571	AGGA	MTNNINDPDDVIGTCSECKSDQPMRYMYNSPFAQAGQSVPCKYCGGIVIITYRETRDQALDNSDTERGL*
Ga0129333_1000008640	F004789	GGAG	MTLPGTYQNPSTKPCWVYCSSCSRCQDKGRYTKCNGCSGRYDPAGKVDVHNDDFCDCKNGILRWRTKEGKLLITRFKSNPFKGTVKYEKKSQDETDWDSYVNDMREKMDDPNFNPITIVEEN*
Ga0129333_1000008648	F026542	AGGA	MNLQNIEKLQNLLSDFLNPQIQEVINSYIDNSKDNPYFIEIPEEDVIDLGLDKLASLVARTSNVYGRSARFAGMARANYKLIEGKYKKVYKSSRVGKNEAEREAAAMEAAEAEYSALITCEAIVNLAESLESSARIASESARKLMDKVQSMQIASSRESKGYYLDEDFKTY*
Ga0129333_1000008652	F007028	N/A	MPKISKNAFEQSTDSPLDSMINSNPGINISTSPVLVCGVNRKINIGNFENIDVYAGISLPLVDVSLEDKEALQAAIENAAAYGFSIVSKETGDRYVLIKESQQGK*