Scaffold Ga0129333_10000056

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10000056
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64543
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (47.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008358	Metagenome / Metatranscriptome	334	Y
F010764	Metagenome / Metatranscriptome	299	Y
F043358	Metagenome / Metatranscriptome	156	Y
F066719	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000005680	F066719	AGGAG	MVVLLAATIISCSDAMSLLYRITRVVGLTELQRTEIIQEIRKVVPSCPVKVVKK*
Ga0129333_1000005682	F008358	N/A	MAYLIITDQSVARGFYMLTQLARVQYEKTKWWILHNPENPIVKYLIWRKSVKMAEELMKEFQDKN*
Ga0129333_1000005687	F043358	GGAGG	MRVYDYRIVEDLNLKTLKPYFFIQRYSIKDQKYFLYSDATFQTLEEAQDAIRLLRKYNEPLYHYVE*
Ga0129333_1000005688	F010764	GGAG	MIEVQKKYKLTLTEQQTKELYLILKNQKDIGHLNTDYEIVLVYNELKKLFDTGIR*