Scaffold Ga0129333_10000007

Overview

Basic Information

• Taxon OID: 3300010354
• Scaffold ID: Ga0129333_10000007
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 123419
• Total Scaffold Genes: 165
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (46.06%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 39.2637
  • Long. (^o): -76.0017

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015864	Metagenome / Metatranscriptome	251	Y
F020144	Metagenome / Metatranscriptome	225	Y
F020347	Metagenome / Metatranscriptome	224	Y
F038911	Metagenome / Metatranscriptome	165	Y
F091309	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_10000007121	F015864	N/A	MTDLRYSTGTELFEFLYAKCREDPDLLATIIDEYIVSLSDSKLDELEDFLMNNFGDES*
Ga0129333_1000000773	F038911	N/A	MVEKVKFVTITRVIDDRKGIHYLDAIDENGYHWTAELDNKQEKWLVYSKLWTKDPQQPYDL*
Ga0129333_1000000781	F020144	N/A	MSSFYTKLPGTDVLRSKIDVFEIHDEAENKTHRVELTVDNAGIFITSCEGGAREDMSISQKDLAIAVARAILEAYGEV*
Ga0129333_1000000782	F091309	GAGG	MEKFEMSNPLKLNEEAPAFSYTPAELFNVIMCIIAHPHKTLTEHDKARAMAVFLTFADYLGNYTESDNNHGHCIYESDSTDFEGYVLQLLGKNKPMDFYRPDVDEILK*
Ga0129333_1000000784	F020347	GAG	MSSKTYLQYVAIPALAFFISAMVSYNLTPEKTPQHTSTVSGSSGDLKCTSSCVVKEQ*