Scaffold Ga0116236_10983595

Overview

Basic Information

• Taxon OID: 3300010353
• Scaffold ID: Ga0116236_10983595
• Source Dataset Name: AD_USCAca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 664
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 33.8
  • Long. (^o): -118.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054825	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116236_109835952	F054825	AGGA	VSTHPATRNLDLWLIDKDDPGVTKPGPGVVYDRAGVGIVFMDERGRDFTFIDTGRALEAWAGQGARLSPALARDLAAALERFADYADGHTAYLLTEADDT*