Basic Information | |
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Taxon OID | 3300010353 Open in IMG/M |
Scaffold ID | Ga0116236_10497398 Open in IMG/M |
Source Dataset Name | AD_USCAca |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1019 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA | |||||||
Coordinates | Lat. (o) | 33.8 | Long. (o) | -118.28 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F037746 | Metagenome / Metatranscriptome | 167 | N |
Protein ID | Family | RBS | Sequence |
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Ga0116236_104973982 | F037746 | GGAGG | MAKVNIENAKANDTVGQEFEANYISGTTDKELELSRKLMSKLLNKHGSRSALEADEQDWAKYKEASYVVYSHSKDRMDAAIKAREDLIKRKNLLSKFFEENPEVLFGLSEWQRINLRKYTDYGLLFDQEYLWDLLKELGKDGTIAHLANVANYIYNDTGFLGGVREDYGALRRGEVRSIYHRPACKSHKTVRPSCSEGCGCGKE* |
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