NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116236_10082197

Scaffold Ga0116236_10082197


Overview

Basic Information
Taxon OID3300010353 Open in IMG/M
Scaffold IDGa0116236_10082197 Open in IMG/M
Source Dataset NameAD_USCAca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3206
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)33.8Long. (o)-118.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023356Metagenome / Metatranscriptome210Y
F048287Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0116236_100821972F023356GAGGMNEIEKLVKESRAPKELAEAVKTGEKKSRAVSVRMEEPLFRAIEAQAELWNVKPAETIRTILRFYFLPVALEMQLRGESEKFWKGELTPEALREYMVFTLEATGKLSSSALFLKGEASRLSEALEGKLSEALKEEREGAEP*
Ga0116236_100821973F048287GAGGMIDTLKLMLSEYKVSPESSLRIQPASYEVATGEKVEYPLFRNEAGTFFGSKAYLNTENWNLTLKPLPAGNRGTGAFLQFSVPKNYYGSNYYSVGEEGTRAALKKVEGELEQSGVLTNLEEAELSRIDTFKNIEPEEPFSSYFSLFSLLRARRAQQRGYGTTFLVSNSSQEFCIYDKLQEMREHALETSELPETMRFEHRALKKEKVRSLYGFTRVGELFHGGYEVVKEKQVESWKNNLFSFSAGEVVVLGSKQLEQEMKVFQEKFGSNWFQYFLKSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELREKVCGTAERN*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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