Scaffold Ga0116236_10051726

Overview

Basic Information

• Taxon OID: 3300010353
• Scaffold ID: Ga0116236_10051726
• Source Dataset Name: AD_USCAca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4365
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 33.8
  • Long. (^o): -118.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037746	Metagenome / Metatranscriptome	167	N
F074119	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116236_100517264	F074119	GAGG	MSEVQVFEVLAKILPYLISLGIGTFAGWELVKRKIHELAEFFKTVDEALYDDAVTEKEFRAIWESGRVLFGTGLKKGAV*
Ga0116236_100517266	F037746	GGAGG	MASVNIDDAVANDTVGQELEENYISGTTDKELEEARKLMSKLLNKYGSRTALESNEEDWARYKKSMYVVYSRSKDLMEEAERSRKDLIKRKNLLSKFFEENPEILFGLSQWQRINIRKYTDYGLLFDQELLWDLLKELGKEGTIAHLANVANYIYNDTGFLGGVREDYDSLKTGPVRSIYHRPVCKSSKTIHPSCSGGCGCTSED*