NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116236_10037931

Scaffold Ga0116236_10037931


Overview

Basic Information
Taxon OID3300010353 Open in IMG/M
Scaffold IDGa0116236_10037931 Open in IMG/M
Source Dataset NameAD_USCAca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5355
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)33.8Long. (o)-118.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043670Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0116236_100379314F043670N/AMGREQLDIIELVRGDKNPYLGKFKIVEYDIERDKIIGGSWQKNLITNKLKASLADVLTGDYDANKHVLGKLAVGTGSSAVAAADLALTTQLGSLKSYVPGSLHNNTYSNKSEVTYYFDYTEADYYGTWAELGLYATNQTDLLTHSLISPTKTFSNTKTMTVYYVIEF*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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