Basic Information | |
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Taxon OID | 3300010353 Open in IMG/M |
Scaffold ID | Ga0116236_10004925 Open in IMG/M |
Source Dataset Name | AD_USCAca |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19662 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (70.83%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA | |||||||
Coordinates | Lat. (o) | 33.8 | Long. (o) | -118.28 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F035532 | Metagenome / Metatranscriptome | 172 | N |
F043670 | Metagenome | 156 | N |
Protein ID | Family | RBS | Sequence |
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Ga0116236_1000492512 | F043670 | GGA | MDITELIRGDKTPYLGKFRIDEYNIERDRIIRGAWQKNLITNILKAALADVLTGGYDSNKHVIGKLAIGTGSTTPLATDQALTTRLGSLKSYVPNSLHNDTYSNKAESTYYFDSTEAGYYGVWAELGLYAANETDLLTHSLISPTKTFDNTKTMTVYYVIEF* |
Ga0116236_1000492521 | F035532 | N/A | MSFAPIAFLANVERIFAAASGLSSVKTWSRPAKLSASASTPEVSIELIAGNVDSVSLSFPNKQSEFYVRFVIFEEQTTTSQLDAIYQGIIATVIANPNLKDINGANTCDYFGSFYGRTISFDLAATERNGVSVNSMKIDVPCLVRDT* |
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