Scaffold Ga0116247_11297567

Overview

Basic Information

• Taxon OID: 3300010352
• Scaffold ID: Ga0116247_11297567
• Source Dataset Name: AD_JPHWca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 519
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 35.92
  • Long. (^o): 139.63

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067727	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116247_112975671	F067727	N/A	LTSSPEQKTNLLSGGKGESVYTIVEQVEDGHLALIRDSWFLLTENSIEKTLLENHIKDENDFRSLRMIESAMKYATITEDRVNFRISEYLTVGLSVNEKGSLFVNDDEMNGETTLESLFSSPIVSIINKNFYSILLYVSQNLDKFVELDVVKRINNLINPYLECFAFNYKNTT